bionty.CellMarker#

class bionty.CellMarker(species='human', source=None, version=None, **kwargs)#

Bases: Bionty

Cell markers.

1. Cell Marker Ontology Edits of terms are coordinated and reviewed on: http://bio-bigdata.hrbmu.edu.cn/CellMarker/

Parameters:

  • species – name of Species entity.

  • source – The key of the source in the local.yml versions file. Get all available databases with bionty.display_available_sources.

  • version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_sources.

Attributes

fields :class:`~<class 'property'>`#

All Bionty entity fields.

source :class:`~<class 'property'>`#

Name of the source.

species :class:`~<class 'property'>`#

The name of Species Bionty.

version :class:`~<class 'property'>`#

The name of version entity Bionty.

Methods

df()#

Pandas DataFrame of the ontology.

Return type:

DataFrame

Returns:

A Pandas DataFrame of the ontology.

Examples

>>> import bionty as bt
>>> bt.CellMarker().df()